Check that reads don’t exceed the maximal allowed length
Add parameter to specify maximal read length
mutscan 0.2.35
Add alternative names for variants (including HGVS identifiers)
mutscan 0.2.34
Expand examples in function documentation
mutscan 0.2.33
Replace Matrix.utils::aggregate.Matrix (removed from CRAN) by DelayedArray::rowsum
mutscan 0.2.32
Expand FASTQ file paths automatically
Filter out reads where the variable region is longer than the best matching WT sequence
mutscan 0.2.31
Add option to include identity line in pairs plots
Select points to label in result plots based on nominal p-value
Add option to manually set the correlation range for coloring pairs plots
mutscan 0.2.30
Swap to MIT license
mutscan 0.2.29
Include degrees of freedom in output from calculateRelativeFC
mutscan 0.2.28
Rename calculatePPIScore to calculateFitnessScore
Add amino acid-related information (AA sequence, mutant name, number of mutated amino acid) to digestFastqs output, propagate through summarizeExperiment and collapseMutantsByAA.
mutscan 0.2.27
Add linkMultipleVariants function
mutscan 0.2.26
Use arithmetic instead of geometric mean for PPI calculations
mutscan 0.2.25
Only add names to WT sequences if they are unnamed
mutscan 0.2.24
Added function to calculate nearest string distances
mutscan 0.2.23
Changed default value of forbidden codons to “”
Make result plots more flexible
Propagate information about the number of mutated bases/codons in summarizeExperiment()
mutscan 0.2.22
Added argument to specify the title of the QC report.
Internal refactoring of argument checking.
mutscan 0.2.21
Added a NEWS.md file to track changes to the package.