Reference

Feature extraction from gene annotation

Extract exon/intron/gene features from gene annotation.

getRegionsFromTxDb()

Get exonic/gene body regions from a transcript database.

getFeatureRanges()

Generate a GRangesList object with feature ranges

exportToGtf()

Export GRangesList to GTF

getTx2Gene()

Generate a transcript-to-gene mapping from a GRangesList

Run EISA

Run Exon-Intron Split Analysis on bulk RNA-seq data

runEISA()

Run Exon-Intron Split Analysis.

plotEISA()

Visualize the results from an exon-intron split analysis.