Rewrite plotEISA to use ggplot2 (and return a ggplot object), set the aspect ratio of the plot to 1 and add an identity line. Additional arguments provided via …, previously passed to plot(), are ignored.
eisaR 1.21.1
Various code improvements detected by lintr
eisaR 1.15.1
Add legacyQLF argument to runEISA (will be passed to edgeR::glmQLFit)
eisaR 1.5.2
Add options to collapse introns by gene and restrict introns to feature ranges in getFeatureRanges.
eisaR 1.0
Initial version
R implementation of Exon-Intron Split Analysis (EISA, doi: 10.1038/nbt.3269)
functionality for extracting spliced and unspliced transcript sequences, as well as intron sequences. e.g. for use in RNA velocity analysis