Plot detection rate per sample — plotFractionDetectedPerSample • einprot

Plot the fraction of detected features in each sample.

plotFractionDetectedPerSample(dfNA, valueType = NULL)

Arguments

dfNA: A DFrame or data.frame with at least columns named "name" and "pNA" representing the sample name and the fraction of missing values.
valueType: A character scalar indicating whether the values in the "pNA" column represent fractions (valueType = "fraction", values in [0, 1]) or percentages (valueType = "percentage", values in [0, 100]). If NULL, the type will be guessed from the observed values.

Value

A ggplot object.

Author

Charlotte Soneson

Examples

sce <- readRDS(system.file("extdata", "mq_example", "1356_sce.rds",
                           package = "einprot"))
plotFractionDetectedPerSample(SummarizedExperiment::colData(sce),
                              valueType = "percentage")