einprot package contains a set of workflows for statistical analysis of quantitative proteomics data processed with MaxQuant (LFQ), FragPipe (LFQ) or Proteome Discoverer (TMT-labelled).
You can install the development version of
einprot from GitHub with:
For more details about how to use
einprot, we refer to the vignette.
A collection of example reports generated by applying
einprot to a variety of public data sets is available here.
If you are using
einprot, please cite
Soneson C, Iesmantavicius V, Hess D, Stadler MB, Seebacher J (2023). einprot: flexible, easy-to-use, reproducible workflows for statistical analysis of quantitative proteomics data. Journal of Open Source Software, 8(89), 5750.
If you run into problems when using
einprot, please first check whether the answer is available in the help pages for the individual functions or in the vignette. If not, please open an issue and explain your problem. Try to provide a reproducible example, and always include the code you used, that will make it much easier for us to help.