LICENSE for SpliceMap Copyright (c) 2010 Kin Fai Au and John Chong Mu "software" is defined as all binaries and source files within the directory containing this license and all sub-directories. Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The following citation shall be included in all copies or substantial portions of the Software. Kin Fai Au, Hui Jiang, Lan Lin, Yi Xing, and Wing Hung Wong Detection of splice junctions from paired-end RNA-seq data by SpliceMap Nucleic Acids Research, Advance access published on April 5, 2010. The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. Bowtie is not covered by this license and is goverened by the licence file in the Bowtie source folder