inst/CITATION
Gaidatzis D, Lerch A, Hahne F, Stadler MB. QuasR: Quantification and annotation of short reads in R. Bioinformatics 31(7):1130-1132 (2015).
@Article{,
title = {QuasR: Quantification and annotation of short reads in R},
author = {Dimos Gaidatzis and Anita Lerch and Florian Hahne and Michael B Stadler},
journal = {Bioinformatics},
volume = {31},
number = {7},
pages = {1130--1132},
year = {2015},
note = {PMID:25417205},
doi = {10.1093/bioinformatics/btu781},
}
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10(3):R25 (2009).
@Article{,
title = {Ultrafast and memory-efficient alignment of short DNA sequences to the human genome},
author = {Ben Langmead and Cole Trapnell and Mihai Pop and Steven L Salzberg},
journal = {Genome Biology},
volume = {10},
number = {3},
pages = {R25},
year = {2009},
note = {PMID:19261174},
doi = {10.1186/gb-2009-10-3-r25},
}
Au KF, Jiang H, Lin L, Xing Y, Wong WH. Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Research, 38(14):4570-8 (2010).
@Article{,
title = {Detection of splice junctions from paired-end RNA-seq data by SpliceMap},
author = {Kin Fai Au and Hui Jiang and Lan Lin and Yi Xing and Wing Hung Wong},
journal = {Nucleic Acids Research},
volume = {38},
number = {14},
pages = {4570--4578},
year = {2010},
note = {PMID:20371516},
doi = {10.1093/nar/gkq211},
}
Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods, 12(4):357-60 (2015).
@Article{,
title = {HISAT: a fast spliced aligner with low memory requirements},
author = {Daehwan Kim and Ben Langmead and Steven L Salzberg},
journal = {Nature Methods},
volume = {12},
pages = {357--360},
year = {2015},
note = {PMID:25751142},
doi = {10.1038/nmeth.3317},
}