inst/CITATION
Gaidatzis D, Lerch A, Hahne F, Stadler MB. QuasR: Quantification and annotation of short reads in R. Bioinformatics 31(7):1130-1132 (2015).
@Article{, title = {QuasR: Quantification and annotation of short reads in R}, author = {Dimos Gaidatzis and Anita Lerch and Florian Hahne and Michael B Stadler}, journal = {Bioinformatics}, volume = {31}, number = {7}, pages = {1130--1132}, year = {2015}, note = {PMID:25417205}, doi = {10.1093/bioinformatics/btu781}, }
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10(3):R25 (2009).
@Article{, title = {Ultrafast and memory-efficient alignment of short DNA sequences to the human genome}, author = {Ben Langmead and Cole Trapnell and Mihai Pop and Steven L Salzberg}, journal = {Genome Biology}, volume = {10}, number = {3}, pages = {R25}, year = {2009}, note = {PMID:19261174}, doi = {10.1186/gb-2009-10-3-r25}, }
Au KF, Jiang H, Lin L, Xing Y, Wong WH. Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Research, 38(14):4570-8 (2010).
@Article{, title = {Detection of splice junctions from paired-end RNA-seq data by SpliceMap}, author = {Kin Fai Au and Hui Jiang and Lan Lin and Yi Xing and Wing Hung Wong}, journal = {Nucleic Acids Research}, volume = {38}, number = {14}, pages = {4570--4578}, year = {2010}, note = {PMID:20371516}, doi = {10.1093/nar/gkq211}, }
Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods, 12(4):357-60 (2015).
@Article{, title = {HISAT: a fast spliced aligner with low memory requirements}, author = {Daehwan Kim and Ben Langmead and Steven L Salzberg}, journal = {Nature Methods}, volume = {12}, pages = {357--360}, year = {2015}, note = {PMID:25751142}, doi = {10.1038/nmeth.3317}, }